서론
본론
시료 채집
Table 1
Target virus | Acronym | Oligo name | Oligo sequence (5’-3’)* | Size (bp) | Reference |
---|---|---|---|---|---|
American plum line pattern virus | APLPV | APLPV1 | GACGAGGCTGATGAAGGGAA | 501 | Cheong et al., 2015 |
APLPV1 | ACCCACAGAAGGACCTACCA | ||||
Apple chlorotic leaf spot virus | ACLSV | ACLSV-F31 | GCAGACCCCTTCATGGAAAGA | 509 | Bae, 2015 |
ACLSV-R31 | CGCAAAGATCAGTCGTAACAGA | ||||
Apple stem pitting virus | ASPV | ASPV-F001 | AAGCATGTCTGGAACCTCATG | 367 | Bae, 2015 |
ASPV-R001-2 | GATCAACTTTACTAAAAAGCATAAGT | ||||
Apple stem grooving virus | ASGV | ASGV-sense | GCCACTTCTAGGCAGAACTCTTTGAA | 273 | Menzel et al., 2002 |
ASGV-antisense | AACCCCTTTTTGTCCTTCAGTACGAA | ||||
Apple skin scar viroid | ASSVd | ASSVd-F91 | ACGAAGGCCGGTGAGAAAG | 202 | Bae, 2015 |
ASSVd-R291 | CCGCTGCGTCAAAGAAAAAG | ||||
Apple mosaic virus | ApMV | ApMV-F5 | CTCCAAACACAACTTTTGATGACTT | 123 | Bae, 2015; |
ApMV-antisense | GTAACTCACTCGTTATCACGTACAA | Menzel et al., 2002 | |||
Apricot pseudo-chlorotic leaf spot virus | APCLSV | APCLSV-F2 | TGGTTAGGTCCAATAACTCC | 1,288 | Niu et al., 2012 |
APCLSV-R2 | GGATGATCCTGGTTTGACAG | ||||
Cherry green ring mottle virus | CGRMV | CGSp-F | GCGCAAACGGACCCTAAG | 650 | Lee et al., 2014 |
CGSp-R | CGCCAGTCACTTCAGTCATT | ||||
Cherry necrotic rusty mottle virus | CNRMV | CNSp-F | CTTTGATCCCAAAAATCCCA | 210 | Lee et al., 2014 |
CNSp-R | TGGTYTTGTCACTTGAACTGTT | ||||
Cucumber mosaic virus | CMV | CMR-C30 | CCACACGGTAGAATCAAAT | 850 | Park, 2015 |
CMR-N40 | GCTCGCCTGTTGAAGTCGCA | ||||
Hop stunt viroid | HSVd | VP19 | GCCCCGGGGCTCCTTTCTCAGGTAAG | 297 | Kofalvi et al., 1997 |
VP20 | CGCCCGGGGCAACTCTTCTCAGAATCC | ||||
Little cherry virus 1 | LChV-1 | LCUW7090 | GGTTGTCCTCGGTTGATTAC | 300 | Bajet and Unruh, 2008 |
LCUWc7389 | GGCTTGGTTCCATACATCTC | ||||
Little cherry virus 2 | LChV-2 | LC26L | GCAGTACGTTCGATAAGAG | 409 | Bajet and Unruh, 2008 |
LC26R | AACCACTTGATAGTGTCCT | ||||
Peach latent mosaic viroid | PLMVd | PLMVd-F214 | CCGTAGAAACTGGATTACGACGTCT | 278 | Designed for this study |
PLMVd-R155 | CCTTACGTCATTGCGAGGTGCTTA | ||||
Plum bark necrosis stem pitting-associated virus | PBNSPaV | PBN195F | CTGGTCTTCCTGCTACTCCTT | 195 | Cui and Hong, 2011 |
PBN196R | AAGCCCACAATCTCAGAGCG | ||||
Plum pox virus | PPV | PPV-F9240 | ATTATGGCACATTTCAGTAACGT | 348 | Designed for this study |
PPV-R9587 | TGATAGATACCGAGACCACT | ||||
Prunus necrotic ringspot virus | PNRSV | PNRSV-P1 | ATGGTTTGCCGAATTTGCAA | 675 | Kim et al., 2009 |
PNRSV-P2 | CTAGATCTCAAGCAGGTCTT |
전체 RNA추출 및 RT-PCR 진단
Table 2
ch, chlorosis; ns, necrotic spot; vc, vein clearing; ye, yellowing; mo, mosaic; APLPV, American plum line pattern virus; ACLSV, Apple chlorotic leaf spot virus; ASPV, Apple stem pitting virus; ASGV, Apple stem grooving virus; ASSVd, Apple skin scar viroid; ApMV, Apple mosaic virus; APCLSV, Apricot pseudo-chlorotic leaf spot virus; CGRMV, Cherry green ring mottle virus; CNRMV, Cherry necrotic rusty mottle virus; CMV, Cucumber mosaic virus; HSVd, Hop stunt viroid; LChV-1, Little cherry virus 1; LChV-2, Little cherry virus 2; PLMVd, Peach latent mosaic viroid; PBNSPaV, Plum bark necrosis stem pitting-associated virus; PPV, Plum pox virus; PNRSV, Prunus necrotic ringspot virus; +, positive reaction; -, negative reaction.